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Academician

MÜSLÜM YILDIZ

Doçent

Gebze Teknik Üniversitesi Temel Bilimler Fakültesi Moleküler Biyoloji Ve Genetik Bölümü

Research topics OpenAlex
  1. Ana Dal Fen Bilimleri ve Matematik Temel Alanı
  2. Yan Dal Moleküler Biyoloji ve Genetik
Keywords YÖKSİS
Articles 17 YÖKSİS 17 · OpenAlex 0 Total citations 363 h-index 8 · OpenAlex OpenAlex coverage %94 matched 16 / 17 Q1 articles 4 Scopus · WoS Q1 2 Best field rank #120 / 385 Keyword · top 31.2% Co-authors 14 0 Turkish institutions

Citation impact

Citation counts of the articles matched in OpenAlex, citing publications from Crossref and the Stanford/Elsevier list. Sources are shown separately and never added up.

OpenAlex YÖKSİS articles matched in OpenAlex: 16
h-index 8 Percentile in Türkiye: 77 #192 of 617 at their university by h-index
i10-index
8
Total citations
363
Top 16% in Türkiye
Per article
22.7
FWCI
1.71
1.00 = world average
World top 1%
0
World top 10%
2

Most cited articles

  1. Allosteric Inhibition of the NS2B-NS3 Protease from Dengue Virus 2013 world top 10% 152 citations
  2. Accurate Binding Free Energy Method from End-State MD Simulations 2022 world top 10% 57 citations
  3. Computational insights into the protonation states of catalytic dyad in BACE1–acyl guanidine based inhibitor complex 2016 38 citations
How is this computed?

h-index and citations are computed from the citation counts of this academic’s YÖKSİS articles matched in OpenAlex (not Google Scholar, WoS or Scopus). Unmatched articles are not included. h-index on the OpenAlex author profile: 9.

Citing publications Crossref 68 publications citing 16 DOI-bearing articles · 10 Türkiye-affiliated
  • 2019 17
  • 2020 14
  • 2021 13
  • 2022 10
  • 2025 12
  • 2026 2
  1. DOI 10.1016/j.compbiolchem.2025.108737 2026
  2. DOI 10.1016/j.jorganchem.2025.123981 2026
  3. Data-Efficient Equivariant NNPs Enable DFT-Accurate Simulations and Implicit Solvation Free Energies TR Esma Mutlu et al. · The Journal of Physical Chemistry B · 2025 · cites 5 articles of this academic
  4. DOI 10.1021/acs.jctc.5c01464 2025
  5. DOI 10.1016/j.foodres.2025.117798 2025
  6. DOI 10.1515/9783111681870-001 2025
  7. DOI 10.1002/slct.202504569 2025
  8. DOI 10.3390/ijms262311762 2025
  9. DOI 10.1093/bbb/zbaf181 2025
  10. DOI 10.1093/pnasnexus/pgaf276 2025
  11. DOI 10.1016/j.tem.2025.09.011 2025
  12. DOI 10.3390/ph18121906 2025
  13. DOI 10.1007/s11030-025-11419-9 2025
  14. DOI 10.1002/slct.202503247 2025
  15. Dimethoxyindoles based thiosemicarbazones as multi-target agents; synthesis, crystal interactions, biological activity and molecular modeling TR Minhal Yıldız et al. · Bioorganic Chemistry · 2022 · cites 2 articles of this academic
  16. Synthesis of 7-azaindole based carbohydrazides and 1,3,4-oxadiazoles; Antioxidant activity, α-glucosidase inhibition properties and docking study TR Samet Izgi et al. · Journal of Molecular Structure · 2022 · cites 2 articles of this academic
  17. Molecular dynamics simulations reveal the plausible agonism/antagonism mechanism by steroids on androgen receptor mutations TR Abdulkadir Kocak et al. · Journal of Molecular Graphics and Modelling · 2022 · cites 3 articles of this academic
  18. DOI 10.3390/membranes12020231 2022
  19. DOI 10.1111/cbdd.14008 2022
  20. DOI 10.1021/acs.jcim.1c01326 2022
  21. DOI 10.1021/acsmedchemlett.1c00653 2022
  22. DOI 10.1002/cmdc.202100695 2022
  23. DOI 10.1021/acsomega.1c05569 2022
  24. DOI 10.2298/jsc210929011d 2022
  25. DOI 10.1016/bs.enz.2021.09.004 2021
  26. DOI 10.3390/biomedicines9081044 2021
  27. DOI 10.1016/j.bpc.2020.106536 2021
  28. DOI 10.2174/1871526520999200905122052 2021
  29. DOI 10.1016/j.bpj.2021.04.015 2021 · cites 2 articles of this academic
  30. DOI 10.3390/tropicalmed6040180 2021

Showing the 30 most recent.

Where does this list come from?

Extracted from the reference lists in Crossref’s public March 2026 data file; 20.3% of the file has been processed, so the list may be incomplete. Crossref citations are never added to or compared with the OpenAlex citation counts; the two sources have different coverage.

Field ranking

Position in the main-field, side-field and keyword cohorts by YÖKSİS article score; each card opens that ranking.

YÖKSİS ?
Keyword rankings 1

Works 17

YÖKSİS and OpenAlex records: index distribution, journals published in, a filterable article list and the other output types.

Indexes and citation percentiles

?
TR Index 0 articles
OpenAlex citation percentile
Top 1%0
Top 10%2
Avg · n 16 %67.6
Other counts

Scopus (SJR)

  • YÖKSİS rows 17

WoS (JCR)

  • YÖKSİS rows 15

Articles

Articles with YÖKSİS and OpenAlex source split; narrow by quartile or TR Index.

17articles

Journals with publications

14 journals

Narrow down

Scopus (SJR)
Q14 Q210 Q31 Q42
WoS (JCR)
Q12 Q28 Q35 Q40
TR Index
0articles

Article list

  1. 2025 Revealing drug interactions: A computational study of non-P450 metabolizing enzymes Journal of Molecular Graphics and Modelling DOI 10.1016/j.jmgm.2025.109156 YÖKSİS SJR Q2 JCR Q2 OpenAlex 22.4%
  2. 2025 Advanced MD Simulation Methods Uncover Mechanisms of SH3 Domain Functions in Small GTPase Signaling Proteins: Structure, Function, and Bioinformatics DOI 10.1002/prot.70006 YÖKSİS SJR Q2 JCR Q2 OpenAlex 8.3%
  3. 2024 Exploring potential Plasmodium kinase inhibitors: a combined docking, MD and QSAR studies Informa UK Limited DOI 10.1080/07391102.2023.2249111 YÖKSİS SJR Q2 JCR Q3 OpenAlex 64.4%
  4. 2024 Benchmarking ANI potentials as a rescoring function and screening FDA drugs for SARS-CoV-2 Mpro Journal of Computer-Aided Molecular Design DOI 10.1007/s10822-024-00554-4 YÖKSİS SJR Q2 JCR Q2 OpenAlex 84.6%
  5. 2024 Computational Analysis of Interactions Between Drugs and Human Serum Albumin Journal of Molecular Recognition DOI 10.1002/jmr.3105 YÖKSİS SJR Q3 JCR Q2 OpenAlex 86.0%
  6. 2023 Computational analysis of substrate recognition of Sars-Cov-2 Mpro main protease Elsevier BV DOI 10.1016/j.compbiolchem.2023.107960 YÖKSİS SJR Q2 JCR Q2 OpenAlex 79.7%
  7. 2023 Revisiting MMPBSA by Adoption of MC-Based Surface Area/Volume, ANI-ML Potentials, and Two-Valued Interior Dielectric Constant American Chemical Society (ACS) DOI 10.1021/acs.jpcb.3c00834 YÖKSİS SJR Q1 JCR Q3 OpenAlex 81.7%
  8. 2022 Accurate Binding Free Energy Method from End-State MD Simulations American Chemical Society (ACS) DOI 10.1021/acs.jcim.2c00601 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 94.2%
  9. 2022 Molecular dynamics simulations reveal the plausible agonism/antagonism mechanism by steroids on androgen receptor mutations Journal of Molecular Graphics and Modelling DOI 10.1016/j.jmgm.2021.108081 YÖKSİS SJR Q2 JCR Q2 OpenAlex 84.5%
  10. 2020 Docking studies suggest the important role of interactions among the catalytic dyad and inhibitors for designing Bace1 specific inhibitors Journal of Molecular Structure DOI https://linkinghub.elsevier.com/retrieve/pii/S0022286020302179 YÖKSİS SJR Q2 JCR Q3
  11. 2019 Molecular Dynamics Studies of Histo-Blood Group Antigen Blocking Human Immunoglobulin A Antibody and Escape Mechanism in Noroviruses Upon Mutation JOURNAL OF COMPUTATIONAL BIOLOGY DOI 10.1089/cmb.2018.0163 YÖKSİS SJR Q2 JCR Q3 OpenAlex 57.0%
  12. 2019 Cysteine Disulfide Traps Reveal Distinct Conformational Ensembles in Dengue Virus NS2B-NS3 Protease Biochemistry DOI 10.1021/acs.biochem.8b00978 YÖKSİS SJR Q1 JCR Q3 OpenAlex 89.8%
  13. 2019 Computational Interrogation of The Human Norovirus-Host Cell Interactions Facilitated by A-Type Antigen Sakarya Üniversitesi Fen Bilimleri Enstitüsü Dergisi DOI 10.16984/saufenbilder.525430 YÖKSİS SJR Q4 OpenAlex 9.6%
  14. 2019 MOLECULAR DYNAMICS STUDIES OF THE NOROVIRUS-HOST CELL INTERACTION MEDIATED BY H-TYPE 1 ANTIGEN Trakya University Journal of Natural Sciences YÖKSİS SJR Q4 OpenAlex 52.9%
  15. 2017 Docking, molecular dynamics and free energy studies on aspartoacylase mutations involved in Canavan disease JOURNAL OF MOLECULAR GRAPHICS MODELLING DOI 10.1016/j.jmgm.2017.03.011 YÖKSİS SJR Q2 JCR Q2 OpenAlex 79.6%
  16. 2016 Computational insights into the protonation states of catalytic dyad in BACE1–acyl guanidine based inhibitor complex JOURNAL OF MOLECULAR GRAPHICS MODELLING DOI 10.1016/j.jmgm.2016.10.013 YÖKSİS SJR Q2 JCR Q2 OpenAlex 89.9%
  17. 2013 Allosteric Inhibition of the NS2B-NS3 Protease from Dengue Virus ACS Chemical Biology DOI 10.1021/cb400612h YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 97.8%

Projects 1

  1. 2022 Yapay zekâ metotlarının klasik moleküler dinamik ve kenetlenme yöntemleriyle kombine edilerek serbest enerji hesaplamaları -Tübitak 3501 · Tamamlandı 2022-01-01 – 2023-03-15

Proceedings 4

  1. 2024 Investigation of the role of π−Cation Interactions between Galectin-3 and Inhibitors by Means of DFT and Molecular Dynamics methods. ANADOLU 16TH INTERNATIONAL CONFERENCE ON APPLIED SCIENCES
  2. — Agonism/antagonism conversion in androgen receptors: A Molecular Dynamic study International Congress on Scientific Advances- ICONSAD'21
  3. 2018 Computational Interrogation of the Emergence of Drug Resistance upon Mutation in Norovirus International Computational Science Congress
  4. 2021 Solvation Free Energy Calculations Of Small Organic Compounds: A Combined ML And Md Method 8th ANATOLIAN APPLIED SCIENCES CONGRESS

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Collaboration network

From the author lists of YÖKSİS publication records. Duplicate records of a work count once; institutions are co-authors’ current YÖKSİS affiliations.

Co-authors
14
With an akaturk profile
0
Turkish institutions
0
Co-authored works
%76

Academic co-authors 0

No co-author with an akaturk profile.

National collaboration 0 institutions

No joint work with another Turkish university.

Other co-authors (incl. international) 14

Abdulkadir Kocak 11ebru akkuş 3ömer tayfuroğlu 3Jeanne A Hardy 2Hatice CanHilal Sena TaşcıIREM NUR ZENGİNIsmail ErolJeffrey A BellMaureen E HillSumana GhoshSèlonou Gautier KankinouWoody Shermanmehmet serdar koca

Authors without an akaturk profile (international researchers, retired or former academics, students, clinicians) are grouped by name spelling; short forms such as “Gulluce M.” join the single full name they match.