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Academician

BERNA DOĞAN

Doktor Öğretim Üyesi

İstanbul Teknik Üniversitesi Fen-Edebiyat Fakültesi Kimya Bölümü

Research topics OpenAlex
Articles 21 YÖKSİS 21 · OpenAlex 0 Total citations 274 h-index 10 · OpenAlex Q1 articles 10 Scopus · WoS Q1 7 Best field rank #264 / 836 Keyword · top 31.6% Co-authors 55 12 Turkish institutions
  1. Ana Dal Fen Bilimleri ve Matematik Temel Alanı
  2. Yan Dal Kimya
Keywords YÖKSİS
Academic summary YÖKSİS and OpenAlex counted separately.
Articles 21
YÖKSİS21 OpenAlex0
Projects 9
Books 0
Proceedings 19

Citation impact

OpenAlex YÖKSİS articles matched in OpenAlex: 10 + YÖKSİS · co-author record: 9
h-index 10 Percentile in Türkiye: 78 #599 of 1,638 at their university by h-index
i10-index
11
Total citations
274
Top 32% in Türkiye
Per article
14.4
FWCI
1.89
1.00 = world average
World top 1%
0
World top 10%
4

Most cited articles

  1. Near-physiological-temperature serial crystallography reveals conformations of SARS-CoV-2 main protease active site for improved drug repurposing 2021 world top 10% 46 citations
  2. Integrating Ligand and Target-Driven Based Virtual Screening Approaches With in vitro Human Cell Line Models and Time-Resolved Fluorescence Resonance Energy Transfer Assay to Identify Novel Hit Compounds Against BCL-2 2020 world top 10% 35 citations
  3. An Integrated in silico Approach and in vitro Study for the Discovery of Small Molecule USP7 Inhibitors as Potential Cancer Therapies 2021 23 citations

h-index and citations are computed from the citation counts of this academic’s YÖKSİS articles matched in OpenAlex (not Google Scholar, WoS or Scopus). Unmatched articles are not included. 9 articles (142 citations) tagged with this academic’s YÖK author id in co-authors’ YÖKSİS records count only towards citations, h-index and i10; article counts, percentiles and rankings use their own YÖKSİS list.

Field ranking

YÖKSİS ?

Collaboration network

From the author lists of YÖKSİS publication records. Duplicate records of a work count once; institutions are co-authors’ current YÖKSİS affiliations.

Co-authors
55
With an akaturk profile
21
Turkish institutions
12
Co-authored works
%95

Academic co-authors 21

  1. SERDAR DURDAĞI Profesör · Bahçeşehir Üniversitesi 18
  2. TİMUÇİN AVŞAR Doçent · Bahçeşehir Üniversitesi 4
  3. BELMA ZENGİN KURT Profesör · Bezm-İ Âlem Vakıf Üniversitesi 2
  4. FATİH SÖNMEZ Profesör · Sakarya Uygulamalı Bilimler Üniversitesi 2
  5. SERDAR KARAKURT Profesör · Selçuk Üniversitesi 2
  6. AYDAN DAĞ Profesör · Bezm-İ Âlem Vakıf Üniversitesi 1
  7. BİLGESU ONUR SUCU Doçent · İstanbul Medipol Üniversitesi 1
  8. EDA TAHİR TURANLI Profesör · Acıbadem Mehmet Ali Aydınlar Üniversitesi 1
  9. ENES SEYFULLAH KOTİL Doktor Öğretim Üyesi · Boğaziçi Üniversitesi 1
  10. HALİS TÜRKER BALAYDIN Profesör · Recep Tayyip Erdoğan Üniversitesi 1
Show all (21)
  1. HASAN DEMİRCİ Doçent · Koç Üniversitesi 1
  2. HÜSEYİN TUNÇ Doktor Öğretim Üyesi · Bahçeşehir Üniversitesi 1
  3. KADER ŞAHİN Doçent · Bandırma Onyedi Eylül Üniversitesi 1
  4. MURAT SARI Profesör · İstanbul Teknik Üniversitesi same university 1
  5. MURAT ŞENTÜRK Öğretim Görevlisi (ders Vermekle Görevli) · Süleyman Demirel Üniversitesi 1
  6. MUSA ÖZİL Profesör · Recep Tayyip Erdoğan Üniversitesi 1
  7. MUSTAFA GÜZEL Profesör · İstanbul Medipol Üniversitesi 1
  8. NECLA BİRGÜL Doçent · Boğaziçi Üniversitesi 1
  9. TÜRKER KILIÇ Profesör · İstinye Üniversitesi 1
  10. ÖZLEM YAPICIER Profesör · Bahçeşehir Üniversitesi 1
  11. ŞARON ÇATAK Profesör · Boğaziçi Üniversitesi 1

National collaboration 12 institutions

Within own university1 joint works · İstanbul Teknik Üniversitesi

  1. Bahçeşehir Üniversitesi 18 works · 4 academics
  2. Boğaziçi Üniversitesi 3 works · 3 academics
  3. Bezm-İ Âlem Vakıf Üniversitesi 2 works · 2 academics
  4. Sakarya Uygulamalı Bilimler Üniversitesi 2 works · 1 academics
  5. Selçuk Üniversitesi 2 works · 1 academics
  6. Acıbadem Mehmet Ali Aydınlar Üniversitesi 1 works · 1 academics
  7. Bandırma Onyedi Eylül Üniversitesi 1 works · 1 academics
  8. Koç Üniversitesi 1 works · 1 academics
  9. Recep Tayyip Erdoğan Üniversitesi 1 works · 2 academics
  10. Süleyman Demirel Üniversitesi 1 works · 1 academics
Show all (12)
  1. İstanbul Medipol Üniversitesi 1 works · 2 academics
  2. İstinye Üniversitesi 1 works · 1 academics

Other co-authors (incl. international) 34

Müge Didem Orhan 3Seyma Calis 3İsmail Erol 3Aida Shahraki 2Busecan Aksoydan 2Duaa Kanan 2Mustafa Yılmaz 2Oğuz Mehmet 2Afranur MiratAlessio NocentiniAli İşbilirAndrea AngeliAsif Ali BhattiBerkey Taha SenBüsra Nur Darendeli KirazCelebi CelebiClaudiu T SupuranDamla UludağElif Beyza KoçFurkan AlmasGulru KayikGurbet TutumluJulian SchneiderKarsten ReuterMelike Aybala GüzelMichel WaroquierNecla Birgül IyisonNihal KarakaşTarek KananTarık KananVeronique Van SpeybroeckViktorya AviyenteÖzge ÖztenÖzgecan Savluğ İpek

Authors without an akaturk profile (international researchers, retired or former academics, students, clinicians) are grouped by name spelling; short forms such as “Gulluce M.” join the single full name they match.

Index quartiles

?
Scopus (SJR) 21
  • Q1 10 %47.6
  • Q2 10 %47.6
  • Q3 1 %4.8
  • Q4 0 %0.0
WoS (JCR) 21
  • Q1 7 %33.3
  • Q2 11 %52.4
  • Q3 3 %14.3
  • Q4 0 %0.0
TR Index 0 articles
OpenAlex citation percentile
Top 1%0
Top 10%1
Avg · n 10 %73.2
Other counts

Scopus (SJR)

  • YÖKSİS rows 21

WoS (JCR)

  • YÖKSİS rows 21

Articles

Articles with YÖKSİS and OpenAlex source split; narrow by quartile or TR Index.

21articles

Journals with publications

18 journals

Narrow down

Scopus (SJR)
Q110 Q210 Q31 Q40
WoS (JCR)
Q17 Q211 Q33 Q40
TR Index
0articles

Article list

  1. 2025 Targeting Ubiquitin-Specific Protease 7 (USP7): A Pharmacophore-Guided Drug Repurposing and Physics-Based Molecular Simulation Study ACS Omega DOI 10.1021/acsomega.5c03150 YÖKSİS SJR Q1 JCR Q2 OpenAlex 72.4%
  2. 2024 Efficient, rapid, and high-yield synthesis of aryl Schiff base derivatives and their in vitro and in silico inhibition studies of hCA I, hCA II, AChE, and BuChE ARCHIV DER PHARMAZIE DOI 10.1002/ardp.202300266 YÖKSİS SJR Q2 JCR Q2 OpenAlex 82.4%
  3. 2024 Machine Learning Approaches to Predict the Selectivity of Compounds against HDAC1 and HDAC6 JOURNAL OF COMPUTATIONAL BIOPHYSICS AND CHEMISTRY DOI 10.1142/S2737416524500121 YÖKSİS SJR Q3 JCR Q3 OpenAlex 67.2%
  4. 2024 Investigating the Effect of GLU283 Protonation State on the Conformational Heterogeneity of CCR5 by Molecular Dynamics Simulations Journal of Chemical Information and Modeling DOI 10.1021/acs.jcim.4c00682 YÖKSİS SJR Q2 JCR Q2
  5. 2023 Prediction of HIV-1 protease resistance using genotypic, phenotypic, and molecular information with artificial neural networks PeerJ DOI 10.7717/peerj.14987 YÖKSİS SJR Q2 JCR Q2 OpenAlex 89.4%
  6. 2022 A novel BH3 mimetic Bcl-2 inhibitor promotes autophagic cell death and reduces in vivo Glioblastoma tumor growth Springer Science and Business Media LLC DOI 10.1038/s41420-022-01225-9 YÖKSİS SJR Q1 JCR Q1
  7. 2022 Screening of Clinically Approved and Investigation Drugs as Potential Inhibitors of SARS-CoV-2: A Combined in silico and in vitro Study MOLECULAR INFORMATICS DOI 10.1002/minf.202100062 YÖKSİS SJR Q2 JCR Q2
  8. 2022 Design and synthesis of novel caffeic acid phenethyl ester (CAPE) derivatives and their biological activity studies in glioblastoma multiforme (GBM) cancer cell lines JOURNAL OF MOLECULAR GRAPHICS & MODELLING DOI 10.1016/j.jmgm.2022.108160 YÖKSİS SJR Q2 JCR Q2
  9. 2021 Investigation of supramolecular interaction of quercetin with N,N-dimethylamine-functionalized p-sulfonated calix[4,8]arenes using molecular modeling and their in vitro cytotoxic response towards selected cancer cells NEW JOURNAL OF CHEMISTRY DOI 10.1039/d1nj03038h YÖKSİS SJR Q2 JCR Q3 OpenAlex 68.5%
  10. 2021 Structural and Functional Characterization of Allatostatin Receptor Type-C of Thaumetopoea pityocampa, a Potential Target for Next-Generation Pest Control Agents Journal of Chemical Information and Modeling DOI 10.1021/acs.jcim.0c00985 YÖKSİS SJR Q1 JCR Q1 OpenAlex 76.2%
  11. 2021 Near-physiological-temperature serial crystallography reveals conformations of SARS-CoV-2 main protease active site for improved drug repurposing STRUCTURE DOI 10.1016/j.str.2021.07.007 YÖKSİS SJR Q1 JCR Q1
  12. 2021 Drug Re-Positioning Studies for Novel HIV-1 Inhibitors Using Binary QSAR Models and Multi-Target-DrivenIn SilicoStudies MOLECULAR INFORMATICS DOI 10.1002/minf.202000012 YÖKSİS SJR Q2 JCR Q2
  13. 2021 An Integrated in silico Approach and in vitro Study for the Discovery of Small-Molecule USP7 Inhibitors as Potential Cancer Therapies CHEMMEDCHEM DOI 10.1002/cmdc.202000675 YÖKSİS SJR Q1 JCR Q3
  14. 2021 Synthesis, molecular docking and molecular dynamics studies of novel tacrine-carbamate derivatives as potent cholinesterase inhibitors BIOORGANIC CHEMISTRY DOI 10.1016/j.bioorg.2021.105225 YÖKSİS SJR Q2 JCR Q2
  15. 2020 Integrating Ligand and Target-Driven Based Virtual Screening Approaches With in vitro Human Cell Line Models and Time-Resolved Fluorescence Resonance Energy Transfer Assay to Identify Novel Hit Compounds Against BCL-2 FRONTIERS IN CHEMISTRY DOI 10.3389/fchem.2020.00167 YÖKSİS SJR Q1 JCR Q2 OpenAlex top 10% OpenAlex 92.6%
  16. 2019 Integration of Text Mining and Binary QSAR Models for Novel Anti-Hypertensive Antagonist Scaffolds BIOPHYSICAL JOURNAL DOI 10.1016/j.bpj.2018.11.2583 YÖKSİS SJR Q1 JCR Q1
  17. 2019 Synthesis, biological activity and multiscale molecular modeling studies of bis-coumarins as selective carbonic anhydrase IX and XII inhibitors with effective cytotoxicity against hepatocellular carcinoma BIOORGANIC CHEMISTRY DOI 10.1016/j.bioorg.2019.03.003 YÖKSİS SJR Q1 JCR Q1
  18. 2019 Formation of the inclusion complex of water soluble fluorescent calix[4]arene and naringenin: solubility, cytotoxic effect and molecular modeling studies Journal of Biomolecular Structure and Dynamics DOI https://www.tandfonline.com/doi/full/10.1080/07391102.2019.1668301 YÖKSİS SJR Q2 JCR Q2
  19. 2019 Current status of multiscale simulations on GPCRs CURRENT OPINION IN STRUCTURAL BIOLOGY DOI 10.1016/j.sbi.2019.02.013 YÖKSİS SJR Q1 JCR Q1 OpenAlex 36.6%
  20. 2016 In silico dissolution rates of pharmaceutical ingredients CHEMICAL PHYSICS LETTERS DOI 10.1016/j.cplett.2016.09.020 YÖKSİS SJR Q2 JCR Q2 OpenAlex 64.6%

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