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Academician

PEMRA ÖZBEK SARICA

PROFESÖR

MARMARA ÜNİVERSİTESİ MÜHENDİSLİK FAKÜLTESİ BİYOMÜHENDİSLİK BÖLÜMÜ

Research topics OpenAlex
  1. Ana Dal Mühendislik Temel Alanı
  2. Yan Dal Biyomühendislik
Keywords YÖKSİS
Academic summary YÖKSİS and OpenAlex counted separately.
Articles 46
YÖKSİS46 OpenAlex0
Projects 16
Books 2
Proceedings 58

Citation impact

OpenAlex YÖKSİS articles matched in OpenAlex: 38
h-index 12 Percentile in Türkiye: 90 #196 of 2,155 at their university by h-index
i10-index
13
Total citations
626
Top 8.3% in Türkiye
Per article
16.5
FWCI
1.08
1.00 = world average
World top 1%
0
World top 10%
3

Most cited articles

  1. Community wide assessment of protein interface modeling suggests improvements to design methodology 2011 world top 10% 136 citations
  2. gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations 2018 world top 10% 132 citations
  3. DNABINDPROT fluctuation based predictor of DNA binding residues within a network of interacting residues 2010 world top 10% 56 citations

h-index and citations are computed from the citation counts of this academic’s YÖKSİS articles matched in OpenAlex (not Google Scholar, WoS or Scopus). Unmatched articles are not included.

Field ranking

YÖKSİS ?

Collaboration network

From the author lists of YÖKSİS publication records. Duplicate records of a work count once; institutions are co-authors’ current YÖKSİS affiliations.

Co-authors
184
With an akaturk profile
29
Turkish institutions
15
Co-authored works
%98

Academic co-authors 29

  1. ONUR SERÇİNOĞLU Doktor Öğretim Üyesi · Gebze Teknik Üniversitesi 12
  2. BERNA SARIYAR AKBULUT Profesör · Marmara Üniversitesi same university 6
  3. ILGAZ TAŞTEKİL ŞEN Araştırma Görevlisi · Sağlık Bilimleri Üniversitesi 6
  4. EMİR ALPER TÜRKOĞLU Doçent · Sağlık Bilimleri Üniversitesi 4
  5. FATMA GİZEM AVCI Doçent · Üsküdar Üniversitesi 4
  6. ASLI BAYSAL Profesör · İstanbul Teknik Üniversitesi 3
  7. HASAN SAYGIN Profesör · İstanbul Aydın Üniversitesi 3
  8. KAZIM YALÇIN ARGA Profesör · Marmara Üniversitesi same university 3
  9. METİN YAZAR Doktor Öğretim Üyesi · İstanbul Okan Üniversitesi 3
  10. ZEHRA ÖZLEM KESKİN ÖZKAYA Profesör · Koç Üniversitesi 3
Show all (29)
  1. CEYDA KASAVİ Doçent · Marmara Üniversitesi same university 2
  2. CEYDA KULA Doktor Öğretim Üyesi · Marmara Üniversitesi same university 2
  3. FATMA ECE ALTINIŞIK KAYA Doktor Öğretim Üyesi · Marmara Üniversitesi same university 2
  4. FATMA TOKAT Doçent · Acıbadem Mehmet Ali Aydınlar Üniversitesi 2
  5. GÖKÇE GÜLLÜ AMURAN Doktor Öğretim Üyesi · Marmara Üniversitesi same university 2
  6. GÜVEN YENMİŞ Doçent · Hatay Mustafa Kemal Üniversitesi 2
  7. AHU SOYOCAK Doçent · İstanbul Aydın Üniversitesi 1
  8. CANSU YAY Araştırma Görevlisi · Gebze Teknik Üniversitesi 1
  9. DAMLA DEMİREL Araştırma Görevlisi · Trabzon Üniversitesi 1
  10. GÜLAÇTI TOPÇU Profesör · Bezm-İ Âlem Vakıf Üniversitesi 1
  11. HALİL İBRAHİM ÖZDEMİR Doçent · Ege Üniversitesi 1
  12. MEHMET KAHRAMAN Profesör · Gaziantep Üniversitesi 1
  13. MEHMET TALHA TINASTEPE Araştırma Görevlisi · Samsun Üniversitesi 1
  14. MUSTAFA AKKİPRİK Profesör · Marmara Üniversitesi same university 1
  15. MÜFİDE AYDOĞAN AHBAB Profesör · Sağlık Bilimleri Üniversitesi 1
  16. SEFA ŞAHİN Araştırma Görevlisi · Samsun Üniversitesi 1
  17. SELEN EMİRHANOĞLU Araştırma Görevlisi · Marmara Üniversitesi same university 1
  18. TUBA KUŞMAN SAYĞI Doktor Öğretim Üyesi · Van Yüzüncü Yıl Üniversitesi 1
  19. İLYAS KARASU Profesör · Samsun Üniversitesi 1

National collaboration 15 institutions

Within own university13 joint works · Marmara Üniversitesi

  1. Gebze Teknik Üniversitesi 13 works · 2 academics
  2. Sağlık Bilimleri Üniversitesi 6 works · 3 academics
  3. Üsküdar Üniversitesi 4 works · 1 academics
  4. Koç Üniversitesi 3 works · 1 academics
  5. İstanbul Aydın Üniversitesi 3 works · 2 academics
  6. İstanbul Okan Üniversitesi 3 works · 1 academics
  7. İstanbul Teknik Üniversitesi 3 works · 1 academics
  8. Acıbadem Mehmet Ali Aydınlar Üniversitesi 2 works · 1 academics
  9. Hatay Mustafa Kemal Üniversitesi 2 works · 1 academics
  10. Bezm-İ Âlem Vakıf Üniversitesi 1 works · 1 academics
Show all (15)
  1. Ege Üniversitesi 1 works · 1 academics
  2. Gaziantep Üniversitesi 1 works · 1 academics
  3. Samsun Üniversitesi 1 works · 3 academics
  4. Trabzon Üniversitesi 1 works · 1 academics
  5. Van Yüzüncü Yıl Üniversitesi 1 works · 1 academics

Other co-authors (incl. international) 155

Turkan Haliloglu 5ASLİHAN ÖZCAN 4Elif Naz Bingol 4Seren Soner 4Emre Apaydın 3Patrick Leevers 3Asuman Bunsuz 2Beste Turanlı 2Esra Başaran 2Evren Gazel Pınar 2Eyüboğlu Peker İrem 2Gizem Gulfidan 2Semra Melis Soyer 2Soumaya Ben Ali Hassine 2hande beklen 2A. W. Peshala AmarajeewaAkiyama YutakaAlveena MukhtiarAmit JaisiAndrew J CrawfordAzé JérômeBaker DavidBates Paul ABernauer JulieBetul Karademir YılmazBonvin Alexandre MJJBourquard ThomasBurak ErmanBush StephenCamacho Carlos JCao LibinCengiz YakicierChen YingChristos ArgyrakisCohen MatiDemerdash Omar NADriggers Camden MELİF NAZ BİNGÖL AKSOYEldin KurpejovicElif Bengü Kızılay

Show all (155)

Emre AbdullahogluEsquivel-Rodríguez JuanEva-Maria StrauchFernández-Recio JuanFleishman Sarel JFouches DenisFİDAN SÜMBÜL YILDIRIMGong XinqiGray Jeffrey JGuharoy MainakGuo DachuanGülin ÖzcanHall Robert GHannah M RowlandHsu Victor LHuan-Xiang ZhouHuang Sheng-YouHuang YangyuHwang HowookInbar YuvalIshida TakashiItzhaki ZoharJacak RonJacob E CornJanin JoelJay F StorzJeanMichel JaultJiang FanJose Ignacio GarzonJosefin StillerJulie C MitchellKanamori EijiKastritis Panagiotis LKerem YalkutKhashan RaedKihara DaisukeKilambi Krishna PKinoshita KengoKo Jun-suKuhlman BrianLee HasupLi ChunhuaLi XiaofanLin LiLiu BinLiu ShiyongLondon NirMUSTAFA CENGİZ YAKICIERMalgorzata A. GarstkaMatsuzaki YuriMelisa soyluMoal Iain HMorgan Jessica LMuhammad TariqMustafa Erhan OzerNakamura HarukiNir BenTalNursena KeskinOhue MasahitoOvalı Şefik KeremPark HahnbeomPeter AndolfattoPetra Peters-WendischPierce Brian GPons CarlesPotapov VladimirPoupon AnnePérez-Cano LauraRobert Charles HSanbo QinSchreiber GideonSchueler-Furman OraSeok ChaokShabnam MohammadiSircar AroopSirin YukselStandley Daron MStranges P BenjaminSusanne DoblerSyed Tarique MoinTakeda-Shitaka MayukoTal Nir BenTerashi GenkiTropsha AlexanderTsuchiya YukoUchikoga NobuyukiVolker F. WendischVreven ThomWang CunxinWang PanwenWeng ZhipingWhitehead Timothy AWodak Shoshana JXiao YiXu RenXu XianjinYang FengYang YuedongYuan DengZacharias MartinZeynep Kutlu KabaşZhan JianZhou YaoqiZou Xiaoqinbatuhan tilkilicedric orelleduygu şentürk karagözhabib burak can erdonmezqianyu Wangrasim murat aydınkalrok frlansema arslansimay cungurtihomir tomasicŞİRİN YÜKSEL KILIÇTURGAY

Authors without an akaturk profile (international researchers, retired or former academics, students, clinicians) are grouped by name spelling; short forms such as “Gulluce M.” join the single full name they match.

Index quartiles

?
Scopus (SJR) 43
  • Q1 18 %41.9
  • Q2 19 %44.2
  • Q3 5 %11.6
  • Q4 1 %2.3
WoS (JCR) 43
  • Q1 14 %32.6
  • Q2 20 %46.5
  • Q3 9 %20.9
  • Q4 0 %0.0
TR Index 2 articles
OpenAlex citation percentile
Top 1%0
Top 10%3
Avg · n 40 %64.2
Other counts

Scopus (SJR)

  • YÖKSİS rows 44

WoS (JCR)

  • YÖKSİS rows 44

Articles

Articles with YÖKSİS and OpenAlex source split; narrow by quartile or TR Index.

46articles

Journals with publications

29 journals

Narrow down

Scopus (SJR)
Q118 Q219 Q35 Q41
WoS (JCR)
Q114 Q220 Q39 Q40
TR Index
2articles

Article list

  1. 2025 Spectroscopic and Docking Investigation of Pepsin Interaction With PET Micro‐ and Nanoplastics ChemistrySelect DOI 10.1002/slct.202504204 YÖKSİS SJR Q3 JCR Q3 OpenAlex 58.0%
  2. 2025 Elucidating the leaching effect of micro-/nano-plastics on the binding, structural, and oxidative characteristics of bovine serum albumin and its impact on cytotoxicity and oxidative stress in the human lung cancer cell line A549 ENVIRONMENTAL SCIENCE-NANO DOI 10.1039/d5en00071h YÖKSİS SJR Q1 JCR Q2 OpenAlex 87.5%
  3. 2025 Attenuation of Type IV pili activity by natural products JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS DOI 10.1080/07391102.2024.2310781 2 YÖKSİS records YÖKSİS SJR Q2 JCR Q3 OpenAlex 56.5%
  4. 2025 Antivirulence therapy: type IV pilus as a druggable target for bacterial infections Medicinal Chemistry Research DOI 10.1007/s00044-024-03338-5 YÖKSİS SJR Q2 JCR Q2 OpenAlex 73.5%
  5. 2025 Understanding the PET micro/nanoplastics as an environmental stressor on pancreatin enzyme: leaching and binding characterization by multi-spectroscopic and molecular docking examination, and the resulting impact on Escherichia coli Nanotoxicology DOI 10.1080/17435390.2025.2544587 YÖKSİS SJR Q2 JCR Q2 OpenAlex 78.7%
  6. 2025 Multi-approach study on diethylhexyl phthalate and monoethylhexyl phthalate binding to lysozyme: In silico, bioactivity and surface plasmon resonance analyses Toxicology Letters DOI 10.1016/j.toxlet.2025.04.005 YÖKSİS SJR Q2 JCR Q2 OpenAlex 74.4%
  7. 2025 Can We Develop Glioma Subtype-Specific Precision Medicines? An Integrative Machine Learning Pipeline for Biomarker Discovery and Drug Repurposing for Glioblastoma and Low-Grade Glioma OMICS: A Journal of Integrative Biology DOI 10.1177/15578100251408278 YÖKSİS SJR Q3 JCR Q3 OpenAlex 57.7%
  8. 2025 Elucidation of the Binding Interaction between β‐Sitosterol and Lysozyme using Molecular Docking, Molecular Dynamics and Surface Plasmon Resonance Analysis Chemistry & Biodiversity DOI 10.1002/cbdv.202401470 YÖKSİS SJR Q2 JCR Q3 OpenAlex 60.2%
  9. 2025 Binding Affinity and Interaction Mechanism of Chlorhexidine with Lysozyme: Insights from Surface Plasmon Resonance, Molecular Docking, and Molecular Dynamics Simulations ChemistrySelect DOI 10.1002/slct.202405476 YÖKSİS SJR Q3 JCR Q3 OpenAlex 71.8%
  10. 2025 Exploring the bifunctionality of aminotransferases in the arogenate route of l -tyrosine synthesis Journal of Biomolecular Structure and Dynamics DOI 10.1080/07391102.2025.2600483 YÖKSİS SJR Q2 JCR Q3 OpenAlex 18.2%
  11. 2024 Polymorphism in F pocket affects peptide selection and stability of type 1 diabetes‐associated HLA‐B39 allotypes European Journal of Immunology DOI 10.1002/eji.202350683 YÖKSİS SJR Q1 JCR Q2 OpenAlex 62.1%
  12. 2024 Surface plasmon resonance, molecular docking, and molecular dynamics simulation studies of lysozyme interaction with tannic acid Food Science & Nutrition DOI 10.1002/fsn3.4315 YÖKSİS SJR Q1 JCR Q2 OpenAlex 68.1%
  13. 2024 Lung Adenocarcinoma Systems Biomarker and Drug Candidates Identified by Machine Learning, Gene Expression Data, and Integrative Bioinformatics Pipeline OMICS: A Journal of Integrative Biology DOI 10.1089/omi.2024.0121 YÖKSİS SJR Q3 JCR Q3 OpenAlex 59.0%
  14. 2023 Piperidine-based natural products targeting Type IV pili antivirulence: A computational approach JOURNAL OF MOLECULAR GRAPHICS & MODELLING DOI 10.1016/j.jmgm.2022.108382 YÖKSİS SJR Q2 JCR Q1 OpenAlex 59.7%
  15. 2023 A review on the mechanistic details of OXA enzymes of ESKAPE pathogens PATHOGENS AND GLOBAL HEALTH DOI 10.1080/20477724.2022.2088496 YÖKSİS SJR Q2 JCR Q1 OpenAlex 64.0%
  16. 2022 How Epstein-Barr virus envelope glycoprotein gp350 tricks the CR2? A molecular dynamics study Journal of Molecular Graphics and Modelling DOI 10.1016/j.jmgm.2022.108196 YÖKSİS SJR Q2 JCR Q2 OpenAlex 55.1%
  17. 2022 Assessment of 13 in silico pathogenicity methods on cancer-related variants Computers in Biology and Medicine DOI 10.1016/j.compbiomed.2022.105434 YÖKSİS SJR Q1 JCR Q1 OpenAlex 84.6%
  18. 2022 Systems biomarkers for papillary thyroid cancer prognosis and treatment through multi-omics networks Archives of Biochemistry and Biophysics DOI 10.1016/j.abb.2021.109085 YÖKSİS SJR Q1 JCR Q1 OpenAlex 84.9%
  19. 2022 Hydration modulates oxygen channel residues for oxygenation of cysteine dioxygenase: Perspectives from molecular dynamics simulations Journal of Molecular Graphics and Modelling DOI 10.1016/j.jmgm.2021.108060 YÖKSİS SJR Q2 JCR Q2 OpenAlex 34.3%
  20. 2022 Epistatic effects between amino acid insertions and substitutions mediate toxin-resistance of vertebrate Na+, K+-ATPases Mol Biol Evol DOI 10.1093/molbev/msac258 YÖKSİS SJR Q1 JCR Q1 OpenAlex 72.4%

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