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Academician

SEFER BADAY

Doçent

İstanbul Teknik Üniversitesi Bilişim Enstitüsü Bilişim Uygulamaları Anabilim Dalı

Research topics OpenAlex
  1. Ana Dal Fen Bilimleri ve Matematik Temel Alanı
  2. Yan Dal Biyoloji
Keywords YÖKSİS
Articles 21 YÖKSİS 21 · OpenAlex 0 Total citations 869 h-index 13 · OpenAlex Q1 articles 14 Scopus · WoS Q1 11 Best field rank #70 / 385 Keyword · top 18.2% Co-authors 82 6 Turkish institutions

Citation impact

OpenAlex YÖKSİS articles matched in OpenAlex: 20 + YÖKSİS · co-author record: 5
h-index 13 Percentile in Türkiye: 84 #444 of 1,642 at their university by h-index
i10-index
14
Total citations
869
Top 7.8% in Türkiye
Per article
34.8
FWCI
2.82
1.00 = world average
World top 1%
1
World top 10%
8

Most cited articles

  1. Catch bond mechanism of the bacterial adhesin FimH 2016 world top 1% 260 citations
  2. 3 D crustal structure along the North Anatolian Fault Zone in north central Anatolia revealed by local earthquake tomography 2012 world top 10% 82 citations
  3. An integrated decision aid system for Bosphorus water crossing problem 2001 78 citations
How is this computed?

h-index and citations are computed from the citation counts of this academic’s YÖKSİS articles matched in OpenAlex (not Google Scholar, WoS or Scopus). Unmatched articles are not included. 5 articles (196 citations) tagged with this academic’s YÖK author id in co-authors’ YÖKSİS records count only towards citations, h-index and i10; article counts, percentiles and rankings use their own YÖKSİS list.

Field ranking

YÖKSİS ?
Keyword rankings 1

Collaboration network

From the author lists of YÖKSİS publication records. Duplicate records of a work count once; institutions are co-authors’ current YÖKSİS affiliations.

Co-authors
82
With an akaturk profile
13
Turkish institutions
6
Co-authored works
%90

Academic co-authors 13

  1. BAŞAK GÜNÇER Profesör · İstanbul Üniversitesi 2
  2. EBRU HACIOSMANOĞLU ALDOĞAN Doçent · İstanbul Üniversitesi-Cerrahpaşa 2
  3. MUHAMMET BEKTAŞ Profesör · İstanbul Üniversitesi 2
  4. ADEM TEKİN Profesör · İstanbul Teknik Üniversitesi same university 1
  5. AHMET GÜL Profesör · İstanbul Üniversitesi 1
  6. BELKIS ATASEVER ARSLAN Profesör · Üsküdar Üniversitesi 1
  7. BİLGE ÖZERMAN EDİS Doçent · İstanbul Üniversitesi 1
  8. FATİH KEMALOĞLU Araştırma Görevlisi · İstanbul Teknik Üniversitesi same university 1
  9. FATİH TOK Doçent · Marmara Üniversitesi 1
  10. FETHİYE AYLİN SUNGUR Profesör · İstanbul Teknik Üniversitesi same university 1
Show all (13)
  1. MEHMET ÖZTÜRK Profesör · Muğla Sıtkı Koçman Üniversitesi 1
  2. ONUR ŞAHİN Profesör · Sinop Üniversitesi 1
  3. YUSUF SICAK Doçent · Muğla Sıtkı Koçman Üniversitesi 1

National collaboration 6 institutions

Within own university2 joint works · İstanbul Teknik Üniversitesi

  1. İstanbul Üniversitesi 2 works · 4 academics
  2. İstanbul Üniversitesi-Cerrahpaşa 2 works · 1 academics
  3. Marmara Üniversitesi 1 works · 1 academics
  4. Muğla Sıtkı Koçman Üniversitesi 1 works · 2 academics
  5. Sinop Üniversitesi 1 works · 1 academics
  6. Üsküdar Üniversitesi 1 works · 1 academics

Other co-authors (incl. international) 69

Simon Berneche 8Guillaume Lamoureux 4Shihao Wang 4CEMİL CAN SAYLAN 3BURAK ERMAN 2Esam A Orabi 2Ian Hamley 2Martin Spiess 2Meryem Hatip Koc 2Mustafa O. Guler 2Valeria Castelletto 2ZİYA YAMAN ARKUN 2AYKUTLU DANAAbdulsalam Yazid BandeAhmet E. TopalAlexandra ZahradníkováAlper D. OzkanAndrea VargaAndres WiemkenAnna HollósiArnaud JavelleAyse B. TekinayBAHRİ ÜLKÜSEVENBUŞRA KAYABeat ErnstBegum DikecogluCharlotte Edwards-GayleChristian AppenzellerHerzogDaniel Hermida-MerinoDaniel WipfDelphine MieuletDeniz ErisElif ArslanEmmanuel GuiderdoniErhan DemirciGergely AgócsGiulio NavarraGoksu Cinar CiftciHedvig TordaiIvan Zahradník

Show all (69)

Jana PavelkováJonathan ErasJulia BirkKemal Alper ÖnsuKenji InabaMasaki OkumuraMaximilian M SauerMiklós S. Z. KellermayerMiroslav SaboMoritz F. LehmannOdile ChatagnierOzge UysalPaul JenöPierre-Emmanuel CourtyRoman P JakobRudi GlockshuberRuslan GarifullinSaliha Nur AkcaySally KoegelShingo KanemuraSuzette MoesThomas BollerThomas RammingTimm MaierTina JunneZeynep Sude KuzuZsolt Mártonfalvifunda aleyna özerŞerife Şentürk

Authors without an akaturk profile (international researchers, retired or former academics, students, clinicians) are grouped by name spelling; short forms such as “Gulluce M.” join the single full name they match.

Indexes and citation percentiles

?
TR Index 1 articles
OpenAlex citation percentile
Top 1%1
Top 10%7
Avg · n 20 %74.6
Other counts

Scopus (SJR)

  • YÖKSİS rows 20

WoS (JCR)

  • YÖKSİS rows 19

Articles

Articles with YÖKSİS and OpenAlex source split; narrow by quartile or TR Index.

21articles

Journals with publications

20 journals

Narrow down

Scopus (SJR)
Q114 Q23 Q32 Q41
WoS (JCR)
Q111 Q25 Q33 Q40
TR Index
1articles

Article list

  1. 2025 Structure-based mechanism of RyR channel operation by calcium and magnesium ions PLOS Computational Biology DOI 10.1371/journal.pcbi.1012950 YÖKSİS SJR Q1 JCR Q1 OpenAlex 89.8%
  2. 2025 Synthesis, biological evaluation and molecular docking of novel 2-pyrazoline-1-carboxamides as anti-Alzheimer agents Future Medicinal Chemistry DOI 10.1080/17568919.2025.2594970 YÖKSİS SJR Q3 JCR Q3 OpenAlex 68.5%
  3. 2025 Colchicine Modulates the Actin Cytoskeleton by Direct Binding to the Monomer and Facilitating Polymerization The FASEB Journal DOI 10.1096/fj.202501907R YÖKSİS SJR Q1 JCR Q1 OpenAlex 77.1%
  4. 2024 Depolymerization of actin filaments by Cucurbitacin I throughbinding G-actin Food Science & Nutrition DOI 10.1002/fsn3.3804 YÖKSİS SJR Q1 JCR Q2 OpenAlex 59.3%
  5. 2024 Accelerating Molecular Docking using Machine Learning Methods Molecular Informatics DOI 10.1002/minf.202300167 YÖKSİS SJR Q2 JCR Q1 OpenAlex top 10% OpenAlex 93.3%
  6. 2024 Optimization of CHARMM force field parameters for ryanodine receptor inhibitory drug dantrolene using FFTK and FFParam Journal of Molecular Modeling DOI 10.1007/s00894-024-05841-3 YÖKSİS SJR Q3 JCR Q3 OpenAlex 61.9%
  7. 2021 The iron(III) and nickel(II) complexes with tetradentate thiosemicarbazones. Synthesis, experimental, theoretical characterization, and antiviral effect against SARS-CoV-2 Journal of Molecular Structure DOI 10.1016/j.molstruc.2021.131166 YÖKSİS SJR Q2 JCR Q3 OpenAlex top 10% OpenAlex 92.6%
  8. 2021 Drug Repurposing Against SARS-CoV-2: Targeting NSP16-NSP10 Interaction Journal of the Turkish Chemical Society Section A: Chemistry DOI 10.18596/jotcsa.923455 YÖKSİS TR Index SJR Q4 OpenAlex 59.3%
  9. 2020 Optimization of CHARMM force field parameters of a prostate cancer drug enzalutamide Journal of Molecular Graphics and Modelling DOI 10.1016/j.jmgm.2020.107541 YÖKSİS SJR Q2 JCR Q2 OpenAlex 43.0%
  10. 2017 Phylogenetic, structural, and functional characterization of AMT31, an ammonium transporter induced by mycorrhization among model grasses MYCORRHIZA DOI 10.1007/s00572-017-0786-8 YÖKSİS SJR Q1 JCR Q2 OpenAlex top 10% OpenAlex 94.6%
  11. 2017 Supramolecular Peptide Nanofiber Morphology Affects Mechanotransduction of Stem Cells BIOMACROMOLECULES DOI 10.1021/acs.biomac.7b00773 YÖKSİS SJR Q1 JCR Q1 OpenAlex 68.3%
  12. 2017 Hierarchical Self-Assembly of Histidine-Functionalized Peptide Amphiphiles into Supramolecular Chiral Nanostructures LANGMUIR DOI 10.1021/acs.langmuir.7b01266 YÖKSİS SJR Q1 JCR Q1 OpenAlex 79.6%
  13. 2016 Catch bond mechanism of the bacterial adhesin FimH Nature Communications DOI 10.1038/ncomms10738 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 1% OpenAlex 99.7%
  14. 2015 Mechanism of NH 4 + Recruitment and NH 3 Transport in Rh Proteins Structure DOI 10.1016/j.str.2015.06.010 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 90.4%
  15. 2015 A PDI-catalyzed thiol–disulfide switch regulates the production of hydrogen peroxide by human Ero1 Free Radical Biology and Medicine DOI 10.1016/j.freeradbiomed.2015.02.011 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 95.2%
  16. 2013 Different Hydration Patterns in the Pores of AmtB and RhCG Could Determine Their Transport Mechanisms Biochemistry DOI 10.1021/bi400015f YÖKSİS SJR Q1 JCR Q2 OpenAlex 66.3%
  17. 2013 Functional asymmetry within the Sec61p translocon Proceedings of the National Academy of Sciences DOI 10.1073/pnas.1318432110 YÖKSİS SJR Q1 JCR Q1 OpenAlex 83.8%
  18. 2012 Ammonium Transporters Achieve Charge Transfer by Fragmenting Their Substrate Journal of the American Chemical Society DOI 10.1021/ja300129x YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 98.2%
  19. 2010 Transport mechanisms in the ammonium transporter family Transfusion Clinique et Biologique YÖKSİS
  20. 2009 Determination of pair-wise inter-residue interaction forces from folding pathways and their implementation in coarse-grained folding prediction Physical Chemistry Chemical Physics DOI 10.1039/b820801h YÖKSİS SJR Q1 JCR Q1 OpenAlex 15.2%

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