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akaturk Academic measurement
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Academician

ATTİLA GÜRSOY

Profesör

Koç Üniversitesi Mühendislik Fakültesi Bilgisayar Mühendisliği Bölümü

Research topics OpenAlex
  1. Ana Dal Mühendislik Temel Alanı
  2. Yan Dal Bilgisayar Bilimleri ve Mühendisliği
Keywords YÖKSİS
Articles 68 YÖKSİS 68 · OpenAlex 0 Total citations 7,866 h-index 36 · OpenAlex Q1 articles 51 Scopus · WoS Q1 36 Best field rank #31 / 3,782 Side field · top 0.8% Co-authors 72 1 Turkish institutions

Citation impact

OpenAlex YÖKSİS articles matched in OpenAlex: 53 + YÖKSİS · co-author record: 6
h-index 36 Percentile in Türkiye: 100 #18 of 453 at their university by h-index
i10-index
52
Total citations
7,866
Top 0.2% in Türkiye
Per article
133.3
FWCI
3.96
1.00 = world average
World top 1%
2
World top 10%
31

Most cited articles

  1. NAMD2 Greater scalability for parallel molecular dynamics 1999 world top 1% 2,457 citations
  2. Principles of protein protein interactions What are the preferred waysfor proteins to interact 2008 world top 1% 697 citations
  3. NAMD A parallel object oriented molecular dynamics program 1996 world top 10% 571 citations
How is this computed?

h-index and citations are computed from the citation counts of this academic’s YÖKSİS articles matched in OpenAlex (not Google Scholar, WoS or Scopus). Unmatched articles are not included. 6 articles (105 citations) tagged with this academic’s YÖK author id in co-authors’ YÖKSİS records count only towards citations, h-index and i10; article counts, percentiles and rankings use their own YÖKSİS list. h-index on the OpenAlex author profile: 47.

Field ranking

YÖKSİS ?
Keyword rankings 2

Collaboration network

From the author lists of YÖKSİS publication records. Duplicate records of a work count once; institutions are co-authors’ current YÖKSİS affiliations.

Co-authors
72
With an akaturk profile
2
Turkish institutions
1
Co-authored works
%99

Academic co-authors 2

  1. SALİHA ECE ACUNER ZORLUUYSAL Doçent · İstanbul Medeniyet Üniversitesi 1
  2. ZEHRA ÖZLEM KESKİN ÖZKAYA Profesör · Koç Üniversitesi same university 1

National collaboration 1 institutions

Within own university1 joint works · Koç Üniversitesi

  1. İstanbul Medeniyet Üniversitesi 1 works · 1 academics

Other co-authors (incl. international) 70

Keskin Ozlem 38Nussinov Ruth 20Tuncbag Nurcan 13Erman Burak 9KALE LV 7Kar Gozde 7Guney Emre 4Keskin O 4Cukuroglu Engin 3Engin Hatice Billur 3Kuzu Guray 3Ozbabacan Saliha Ece Acuner 3Schulten K 3Skeel RD 3Atun M 2Aytuna AS 2Babur O 2Cengiz I 2Cetin-Atalay R 2Dalke A 2Demir E 2Dogrusoz U 2Erzin Engin 2Humphrey W 2Ma Buyong 2Maiorov Emine Guven 2Nelson MT 2Nisanci G 2Sireli R 2Sonmez Omer Ozan 2Turkay Metin 2Unal E. Besray 2Abaci TAbali Ali OezguerAkkus UAn OmerArkun YAtalay RAyaz A andGulesir GBhandarkar M

Show all (70)

Brunner RFraternali FrancaGudukbay UGuersoy AttilaGurgey AytemizKUFRIN RKalyoncu SibelKocatas AKrawetz NMoaaz KhokharNg Ozden HatirnazOgmen UOliva BaldoOrmeci LerzanOzbek UgurOzboyaci MusaOzturk MPalazoglu APhillips JSalman F. SibelSanli DenizShinozaki ASinop AKTsai C. J.Tunca GuzinUlucan OzlemVANKA SPVaradarajan KYogurtcu Osman N.Yuret D

Authors without an akaturk profile (international researchers, retired or former academics, students, clinicians) are grouped by name spelling; short forms such as “Gulluce M.” join the single full name they match.

Indexes and citation percentiles

?
TR Index 0 articles
OpenAlex citation percentile
Top 1%2
Top 10%30
Avg · n 53 %86.6
Other counts

Scopus (SJR)

  • YÖKSİS rows 61

WoS (JCR)

  • YÖKSİS rows 61

Articles

Articles with YÖKSİS and OpenAlex source split; narrow by quartile or TR Index.

68articles

Journals with publications

38 journals

Narrow down

Scopus (SJR)
Q151 Q29 Q31 Q40
WoS (JCR)
Q136 Q215 Q38 Q42
TR Index
0articles

Article list

  1. 2025 DeepAllo: allosteric site prediction using protein language model (pLM) with multitask learning BIOINFORMATICS DOI 10.1093/bioinformatics/btaf294 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 98.6%
  2. 2014 The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer PLOS COMPUTATIONAL BIOLOGY DOI 10.1371/journal.pcbi.1003470 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 95.3%
  3. 2014 Non Redundant Unique Interface Structures as Templates for ModelingProtein Interactions PLOS ONE DOI 10.1371/journal.pone.0086738 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 95.7%
  4. 2013 Structural and functional analysis of perforin mutations in associationwith clinical data of familial hemophagocytic lymphohistiocytosis type 2 FHL2 patients PROTEIN SCIENCE DOI 10.1002/pro.2265 YÖKSİS SJR Q1 JCR Q3 OpenAlex 85.9%
  5. 2013 Integrating Structure to Protein Protein Interaction Networks That DriveMetastasis to Brain and Lung in Breast Cancer PLOS ONE DOI 10.1371/journal.pone.0081035 YÖKSİS SJR Q1 JCR Q1 OpenAlex 84.8%
  6. 2013 The structural network of inflammation and cancer Merits and challenges SEMINARS IN CANCER BIOLOGY DOI 10.1016/j.semcancer.2013.05.003 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 94.8%
  7. 2013 Identification of Interconnected Markers for T Cell Acute LymphoblasticLeukemia BIOMED RESEARCH INTERNATIONAL DOI 10.1155/2013/210253 YÖKSİS SJR Q1 JCR Q3 OpenAlex 79.6%
  8. 2013 Exploiting Conformational Ensembles in Modeling Protein ProteinInteractions on the Proteome Scale JOURNAL OF PROTEOME RESEARCH DOI 10.1021/pr400006k YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 93.0%
  9. 2013 Emerging Role of the Ubiquitin proteasome System as Drug Targets CURRENT PHARMACEUTICAL DESIGN YÖKSİS SJR Q1 JCR Q1 OpenAlex 74.4%
  10. 2012 Protein protein Interfaces Integrated into Interaction Networks Implications on Drug Design CURRENT PHARMACEUTICAL DESIGN YÖKSİS SJR Q1 JCR Q1 OpenAlex 89.9%
  11. 2012 A Strategy Based on Protein Protein Interface Motifs May Help inIdentifying Drug Off Targets JOURNAL OF CHEMICAL INFORMATION AND MODELING DOI 10.1021/ci300072q YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 94.9%
  12. 2012 Fast and accurate modeling of protein protein interactions by combiningtemplate interface based docking with flexible refinement PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS DOI 10.1002/prot.24022 YÖKSİS SJR Q1 JCR Q2 OpenAlex 88.1%
  13. 2012 Enriching the human apoptosis pathway by predicting the structures ofprotein protein complexes JOURNAL OF STRUCTURAL BIOLOGY DOI 10.1016/j.jsb.2012.02.002 YÖKSİS SJR Q1 JCR Q2 OpenAlex top 10% OpenAlex 92.7%
  14. 2012 HotRegion a database of predicted hot spot clusters NUCLEIC ACIDS RESEARCH DOI 10.1093/nar/gkr929 YÖKSİS SJR Q1 JCR Q1 OpenAlex 87.9%
  15. 2012 Constructing structural networks of signaling pathways on the proteomescale CURRENT OPINION IN STRUCTURAL BIOLOGY DOI 10.1016/j.sbi.2012.04.004 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 97.0%
  16. 2012 Human Proteome scale Structural Modeling of E2 E3 InteractionsExploiting Interface Motifs JOURNAL OF PROTEOME RESEARCH DOI 10.1021/pr2009143 YÖKSİS SJR Q1 JCR Q1 OpenAlex 89.3%
  17. 2011 Prediction of protein protein interactions unifying evolution andstructure at protein interfaces PHYSICAL BIOLOGY DOI 10.1088/1478-3975/8/3/035006 YÖKSİS SJR Q1 JCR Q2 OpenAlex top 10% OpenAlex 92.8%
  18. 2011 Predicting protein protein interactions on a proteome scale by matchingevolutionary and structural similarities at interfaces using PRISM NATURE PROTOCOLS DOI 10.1038/nprot.2011.367 YÖKSİS SJR Q1 JCR Q1 OpenAlex top 10% OpenAlex 98.5%
  19. 2011 Structural cooperativity in histone H3 tail modifications PROTEIN SCIENCE DOI 10.1002/pro.745 YÖKSİS SJR Q1 JCR Q3 OpenAlex 53.5%
  20. 2011 Prediction of Protein Protein Interactions at Genome Scale BIOPHYSICAL JOURNAL YÖKSİS SJR Q1 JCR Q2

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