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Academician profile · DOÇENT

MUHAMMED ERKAN KARABEKMEZ

İSTANBUL MEDENİYET ÜNİVERSİTESİ

  • Ana Dal Mühendislik Temel Alanı
  • Yan Dal Biyomühendislik
  • MÜHENDİSLİK VE DOĞA BİLİMLERİ FAKÜLTESİ
  • BİYOMÜHENDİSLİK BÖLÜMÜ
Articles YÖKSİS 14
Projects 1
Books 5
Proceedings 15
Patents 1
Artistic 1
Scopus (SJR)
Q1 6 Q2 4 Q3 2 Q4 0
WoS (JCR)
Q1 4 Q2 5 Q3 2 Q4 0
TR Index 1 articles

Scopus (SJR)

Q1 6 Q2 4 Q3 2 Q4 0

WoS (JCR)

Q1 4 Q2 5 Q3 2 Q4 0

TR Index

1 articles

14 publications total

Articles

  1. 2025 RSEA: A Web Server for Pathway Enrichment Analysis of Metabolic Reaction Sets Biotechnology and Bioengineering DOI 10.1002/bit.29020
  2. 2025 Harnessing Human Holobiome and Meta-Multi-Omics Analyses for Medical Applications OMICS: A Journal of Integrative Biology DOI 10.1089/omi.2025.0024
  3. 2024 Parameterization of asymmetric sigmoid functions in weighted gene co-expression network analysis Computational Biology and Chemistry DOI 10.1016/j.compbiolchem.2023.107998
  4. 2024 Multi-Omics Analysis of Primary Prostate Cancer Datasets Reveals Novel Biomarkers Biochemical Genetics DOI 10.1007/s10528-024-10899-y
  5. 2024 Insights into yeast response to chemotherapeutic agent through time series genome-scale metabolic models BIOTECHNOLOGY AND BIOENGINEERING DOI 10.1002/bit.28833
  6. 2022 The applications of multiple route optimization heuristics and meta-heuristic algorithms to solid waste transportation: A case study in Turkey Decision Analytics Journal DOI 10.1016/j.dajour.2022.100113
  7. 2021 Time-dependent re-organization of biological processes by the analysis of the dynamic transcriptional response of yeast cells to doxorubicin Molecular Omics DOI 10.1039/D1MO00046B
  8. 2021 Data Ethics in Digital Health and Genomics The New Bioethics DOI 10.1080/20502877.2021.1996965
  9. 2019 Protein Komplekslerini Gruplayarak İnsanda Protein-Protein Etkileşim Ağlarının Karmaşıklığını Düşürmek ANADOLU KLİNİĞİ TIP BİLİMLERİ DERGİSİ
  10. 2019 A modified Soft-thresholding Approach in the Transcriptomic Analysis of Adaptation of E.coli to Alternating Substrate Conditions Hittite Journal of Science and Engineering
  11. 2018 Doxorubicin induces an extensive transcriptional and metabolic rewiring in yeast cells SCIENTIFIC REPORTS DOI 10.1038/s41598-018-31939-9
  12. 2016 A novel topological centrality measure capturing biologically important proteins Molecular BioSystems DOI 10.1039/C5MB00732A
  13. 2012 A Novel Strategy for Selection and Validation of Reference Genes in Dynamic Multidimensional Experimental Design in Yeast PLoS ONE DOI 10.1371/journal.pone.0038351
  14. 2011 How yeast re programmes its transcriptional profile in response to different nutrient impulses BMC Systems Biology DOI 10.1186/1752-0509-5-148

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