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Makale detayı · 2018

MODE-TASK: large-scale protein motion tools

Dergi

Bioinformatics

ISSN 1367-4803

YÖKSİS OpenAlex Açık erişim · hybrid SJR Q1 JCR Q1 Atıf 57 Yüzdelik 85.8% FWCI 1.85
Yıl
2018
DOI
10.1093/bioinformatics/bty427
Tür
article

Veri kaynağı ayrımı

  • YÖKSİS YÖKSİS makale kaydı
  • YÖKSİS dergi adı Bioinformatics
  • Katalog eşleşmesi (ISSN) Bioinformatics
  • OpenAlex OpenAlex zenginleştirmesi (özet, atıf, konular)

OpenAlex kaydı

Özet

OpenAlex · İngilizce

Summary: MODE-TASK, a novel and versatile software suite, comprises Principal Component Analysis, Multidimensional Scaling, and t-Distributed Stochastic Neighbor Embedding techniques using Molecular Dynamics trajectories. MODE-TASK also includes a Normal Mode Analysis tool based on Anisotropic Network Model so as to provide a variety of ways to analyse and compare large-scale motions of protein complexes for which long MD simulations are prohibitive. Beside the command line function, a GUI has been developed as a PyMOL plugin. Availability and implementation: MODE-TASK is open source, and available for download from https://github.com/RUBi-ZA/MODE-TASK. It is implemented in Python and C++. It is compatible with Python 2.x and Python 3.x and can be installed by Conda. Supplementary information: Supplementary data are available at Bioinformatics online.

Konular

Atıflar

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57 atıf

OpenAlex cited_by_count (önbellek / veritabanı)

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Yazarlar

  1. CANAN ATILGAN SABANCI ÜNİVERSİTESİ
  2. ALİ RANA ATILGAN